Not sure what happened but The Bellossom Ability seems to have broken, and now my berries won't grow, the "freshly planted" label hasn't gone away at all, and even with Berry Collector equipped, I have only grown 43 berries, in 24 hours.
I've very much been enjoying the game, but I'm at a crossroads where I could wipe my save and loose over 200 shinies, and 160 legendaries, or hope that this is something that can get fixed.