As of this update the game doesn't seem to work at all beyond the Infared generator and the "Brighter Photons" upgrade. I've bought generators up to Yellow and various upgrades and none of them have contributed to my Flux output, only the base value of Infared seems to be counted.
I've tried doing a hard reset as I did play prior to the update but this hasn't helped - if anything it's slowed me down as I seemed to have some progress carried over from the previous version. Based on what I currently own following the reset (16 Infared gens, 3 Red gens, 1 Orange gen, Infared Resonance) I should be earning 27/s but I'm only earning 11/s. Hope this is fixed soon as I'd really like to see the new content.