I would prefer to not say anything specific because i dont like spoiling things for others, but the most recent ones were;
1) I was running through Androids story and got to her big problem of feeling alone, and introducing her to Kalis friends at the Cafe, but soon after had a couple scenes in Kalis story the included both Android and Kim or Ami yet the scenes played out more like as if they hadnt met before, and
2) I had run through Marias story until she starts her "search", and after resolving that part and bringing her back to the hotel, i had a few other scenes based on the Twins and Ashleys stories that interacted with her, where shes still far too happy than she really should be... I hope that makes enough sense.
3) It was in Ashleys story near the end, where we met three gang members and i had a flashback to an event that i never had, with the gangers in like combat gear? or something? which im assuming is from another characters storyline that i again hadnt run through yet.
I tried to evenly distribute my attention between the characters where i could without using the Wiki and the event timelines for them, but i think it was the forced "be in this room at this time" scenes that kind of skewed the way they played out for me and made the timelines not quite add up.
Like i said, its only a personal gripe and i dont expect anything to change, im still enjoying it, but have now brought up the Wiki, am running through each girls story according to the patch releases and that seems to be lining a few things back up. (was REALLY behind on Lin without having bought the Elves!)