I like it.
I think there might be a problem with the story flags though. I got to the part where you're supposed to choose a faction and the popup kept reappearing every second even after I chose. I think it's because the story flag for each faction intro was set but not unset when the "choose" popup appeared.
Also, the instructions say to type join [FACTION] but the actual command is join[FACTION] with no space.
Cool game. Hope you continue.