Present in v0.1.0.1 as well but I'm just late to the comment party: once you're through initial dialogue and collect your crewmates, the transporter pad indicates that it's non-functional, but the transporter controls still allow you to select a location. Choosing "Yes" will initiate the ship-leaving dialogue, but as you have no locations to choose from you get stuck in the middle of the ocean without a way to escape the selection menu.