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Its isn't letting me do anything other than look at my Pokedex (which doesn't scroll) and re-arrange my Pokemon. Is there something I'm mising?

Yeah, click on the home button at the left of your screen (as you can see with the screen shots) You will display all the functionalities

I have, none of the buttons work other than the ones taking me to the Pokedex and Pokemon screens. Which option should I go for?