Thanks for the heads up.
Apparently in this update, the reference the input_mapping was changed to a different location ...so some of the input_mapping I had done isn't registering (for example, advancing through dialogue with the gamepad uses UI_Accept....which has to just be bound in the options to the A button). That's also why pages isn't working with gamepad (it just isn't bound, but still exists in controls options).
Should have that fixed with a starting input_mapping with the next patch (and also the manual / starting tutorial).
The UI not showing the hotkeys and not storing the hotkeys on load is new though. Should be an easy fix at least (just need to adjust what the save file is storing), so will have it in the next patch also.